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Eugene V Koonin
12 February 2009 @ 11:20 am

Happy Birthday!
And congratulations for the 150th anniversary of, possibly, the greatest book ever published!
My own little piece of birthday cake here:
http://nar.oxfordjournals.org/cgi/content/full/gkp089
 
 
Eugene V Koonin
19 January 2009 @ 07:06 pm
О сущностных характеристиках фундаментальных перемен на политической сцене

Уходит белый президент Соединенных Штатов
Приходит черный Президент Соединенных Штатов
Уходит черная госсек Соединенных Штатов
Приходит белая госсек Соединенных Штатов
Вот в этом-то она и есть
суть демократьи


Уходит белый президент Соединенных Штатов
Приходит черный Президент Соединенных Штатов
а Белый Дом он вот как есть
Не черный дом какой
Вот в этом-то и состоит
традицьи суть

Уходит белый президент Соединенных Штатов
Приходит черный Президент Соединенных Штатов
А нам-то что? Нам по хренам
В натуре
Тут-то вся и есть
суть похуизма
 
 
Eugene V Koonin
14 December 2008 @ 07:58 pm
Весь мир - бардак, мадам в запое
Клиентов нынче нет как нет,
И все мы - бляди...и такое
Уже мне снится много лет

Навеяно   
http://esya.livejournal.com/637521.html
а также популярной поговоркой времен моего школьного отрочества:
Весь мир - бардак, все люди - бляди
По свойственной деликатности, помещаю сюда, a не в comments
 
 
Eugene V Koonin
13 December 2008 @ 11:33 pm
Сегодня весь мир превратился в загаженный хлев,
И все посходили с ума от паденья валют...
Послушай...под самой Бер-Шевой, в пустыне Негев
Ободранный бродит верблюд
 
 
Eugene V Koonin
13 December 2008 @ 11:27 pm
вот, говорят, неправ я: под помаркой имел в виду ОМ, на самом делe, natural selection, so to speak, elimination of the unfit...и генетики так говорят
http://www.vestnik.com/issues/2000/0718/koi/golubovsk.htm
и литературоведы
http://www.lechaim.ru/ARHIV/151/sarnov.htm
и, по-видимому, в биографическом контексте, они правы, учитывая влияние Кузина с его неоламаркизмом и проч
но вот не хочется мне как-то отказываться от моей трактовки, как-то она по тексту хорошо проходит, и по-моему, согласуется и с последней, такой поразительной строфой:

И подъемный мост она забыла,
Опоздала опустить для тех,
У кого зеленая могила,
Красное дыханье, гибкий смех.

и вообще, может, в полисемантичности этой и сила...
 
 
Eugene V Koonin
11 December 2008 @ 10:43 pm
Если все живое лишь помарка
За короткий, выморочный день,
На подвижной лестнице Ламарка
Я займу последнюю ступень

всю жизнь не мог понять, что, собственно, это значит,
и очень расстраивался...и вдруг понял (?)
имеется в виду, что, если вся эволюция - лишь подготовка
к блистательному явлению Homo sapiens и короткому выморочному
дню человечсекой цивилизации, то пошло оно все...
а на самом деле-то все не так, и в сложности и разнообразии только
и состоит ценность - усоногие ничем не xуже человека,
т.е., ОМ понимал эволюцию правильно, примерно, как Steven Jay Gould лет через 50
...очень обрадовался

осознал, между прочим, размышкляя всерьез об эволюции,
вовсе не об ОМ...
 
 
Eugene V Koonin
21 November 2008 @ 05:52 pm

пожилая фрейдистка из далласа
занималась семантикой фаллоса
но фрейдизм для техаса
дело низшего класса
и ей ничего не досталося

[завершено после 12 лет творческой импотенции благодаря плодотворной дискуссии с уважаемым ymi_an_island]

 
 
Eugene V Koonin
13 November 2008 @ 11:08 pm
Does quantum uncertainty imply that there is no God? Indeed, if at the fundamental level, events are inherently unpredictable, as quantum physics tells us, then, the world is NOT governed by an omniscient and omnipotent Being which is the definition of God (and the essence of the ontological argument, in particular). Ergo, God does not exist. Then, Einstein's dictum "The Lord does not play dice" implies that, if He does, he is no God.
 
 
Eugene V Koonin
08 November 2008 @ 05:21 pm
информатик из города хайфа
от науки не чувствовал кайфа
для сравненья геномов
не имел он приемов
а кого спросить в городе хайфа
 
 
Eugene V Koonin
08 November 2008 @ 02:35 pm
один террорист из хамаса
декламировал вслух хабермаса
но такая досада
попал в руки масада
и осталась аморфная масса
 
 
Eugene V Koonin
07 November 2008 @ 09:07 am
один теоретик из cerna
был великий знаток постмодерна
игры черной дыры
наблюдал он с горы
но окончилось все таки скверно
 
 
Eugene V Koonin
07 November 2008 @ 09:04 am
известный политик из грузии
жил годами во власти иллюзии
на встающих с колен
положить хотел хрен
но случились большие конфузии
 
 
Eugene V Koonin
06 November 2008 @ 11:56 pm
лимерик

один жж-юзер из кракова
комментировал всех одинаково
как суровый монах
посылал он всех nach
без смущенья ну просто без всякого
 
 
Eugene V Koonin
06 November 2008 @ 12:05 am
Осень в ЖЖ

Виртуальные товарищи-подруги...
Вот лежу себе, читаю пост за постом...
Нынче осень, все меняется в округе,
Как-то ветрено - и волны с перехлестом
 
 
Eugene V Koonin
05 November 2008 @ 10:51 pm

On the origin and evolution of religion

A slippery subject but somehow I cannot help thinking about it. I am no expert but these are thoughts of an evolutionary biologist.  Of course, these thoughts are strictly rationalist, to start with.

So essentially there seems to be two fundamental ideas on the origin and evolution of religion:

i)                  Religion is thought to confer selective advantage to its adepts in developing human communities  - religion was the force that kept the groups viable by encouraging/enforcing altruism or, more precisely, self-sacrifice for the good of the community – the idea that goes back to Emile Durkheim ("God is society, writ large.").

ii)                 Religion is viewed as a collection of selfish, virus-like memes, a position that is propounded in the recent but already famous book of Dawkins.

I suggest that the prominence and persistence of religion in the course of human history are so unparalleled that none of these frameworks alone would be able to explain its origin and evolution.  Rather, these factors could and, I suppose, should be considered complementary so that both are necessary for the survival and spread of religion. 

Religion could have emerged as an adaptive mechanism, namely, a mechanism that enables group selection and that was a pre-requisite of the consolidation of large communities.  More precisely, the emergence of religion can be tentatively mapped to the transition stage from kin selection within families that routinely occurs in other animals (sacrificing your life for your brother’s family is justified because this results in propagation of your alleles) to group selection in larger assemblies of individuals that is not a mechanism considered feasible in animals (giving up your life for a group of strangers is a no go). Religion is mechanism that promotes such sacrifice and hence consolidates and preserves communities. In other words, applying weak anthropic reasoning, the fact that we live in a civilization is predicated on the emergence of religion at an early stage of the evolution of human communities – if not for religion, there would be no civilization.  To turn this into a prediction, if we ever encounter an unrelated civilization, they definitely will have religion.

However, I posit that, to be as successful as it is, religion, in addition to its adaptive value, must have acquired the properties of a selfish replicator (see Dawkins). In this dimension, I believe that the best biological analogy is not even a virus but an addiction toxin-antitoxin (TA) module of the kind that is common in bacteria and archaea. A TA module consists of two genes one of which encodes a toxin (e.g., a nuclease) that, if unleashed, kills the cell, and the other one encodes an antitoxin, a protein that binds the toxin and reversibly inactivates it. The antitoxin has a much shorter half-life than the toxin, so the toxin can be kept in check only if the antitoxin is constantly produced. Hence prokaryotes become addicted to plasmids that carry TA modules: only those cells survive that carry the plasmid ensuring ongoing production of both the toxin and the antitoxin whereas those cells that lose the plasmid are promptly destroyed by the released toxin (see Gerdes et al. Prokaryotic toxin-antitoxin stress response loci. Nat Rev Microbiol. 2005 May;3(5):371). It is tempting to think that human societies are similarly addicted to religion that combines memes of destruction (killing infidels etc) with those that keep them in check. Attempts to eliminate religion forcefully lead to the destruction memes being  unleashed (case in point: the USSR), hence the persistence of religion. It does not mean, of course, that addictive modules are indestructible in principle: they can be eliminated if the toxin gene perishes first. The same could apply to religion (possible case in point: modern Europe).

An interesting point is whether or not religion has any adaptive value in modern societies, where the state has taken over many regulatory functions, or does religion survive solely owing to its selfish properties? Dawkins insists that religion, at least, in our day, is entirely selfish. I have my doubts and suspect that both evolutionary forces remain relevant.

Such are some loose thoughts…

 

 


 
 
Eugene V Koonin
02 November 2008 @ 01:16 am
Is Dobzhansky's maxim limited to biology? I do no think so, at least, it can be easily generalized. In a world ruled by the arrow of time, which our world definitely is, nothing AT ALL makes sense except in the light of temporal change that could be just as well called evolution (as in "cosmic evolution", for instance) and that is intrinsically contingent.  Which  is why  I believe that cosmology, astrophysics and astronomy are vital for understanding the uni(multi)verse , whatever some physicists seem to think of the status of these disciplines. This is not my main subject, though. That subject is: how and why is biological evolution different? The short, intuitive answer is that in the  core of  life is replication, and the rest of evolution follows (natural selection etc - more on this later) from it as a corollary. However, this answer is not quite satisfactory inasmuch as many obviously inanimate objects can  replicate (crystals, above all). So what are the unique features of biological replication and/or its substrate? To be discussed in the next post.
 
 
Eugene V Koonin
01 November 2008 @ 10:43 pm
один хулиган из евразии
любил сочинять безобразии
наплевав на устои
он порочил святое
покуда хватало фантазии
 
 
Eugene V Koonin
30 October 2008 @ 10:39 pm
"Nothing in Biology Makes Sense Except in the Light of Evolution"

this phrase of Dobzhansky is, possibly, the most famous pronouncement ever made by a biologist (appearing in a beautiful essay published in an obscure journal but now freely available on the web:http://people.delphiforums.com/lordorman/light.htm) . I suppose this motto is usually taken to mean something rather vague, to the effect that all features of all life forms are a result of evolution; reading the article itself seems  to comport with such understanding (much of the brief essay is dedicated to an attempt to prove that there is no contradiction between evolutionary biology and religion, specifically, christianity - on this, perhaps, later). I think, however, that Dobzhansky's aphorism can be bestowed with a much more concrete and substantial meaning. Considering that evolution is all contingency or, speaking in a (pseudo)physical language, a manifestation of deterministic chaos (nothing very new here, see Gould, Dennett etc) - so rewinding and replaying the tape would never give the same or even closely similar results - Dobzhansky's phrase seems to reflect a plain, literal truth about life, namely, that life forms can be adequately represented only by an explicit description of the steps that led to their emergence. There are, of course, patterns and trends in evolution but no deterministic laws that  would allow a prediction of the actual course of events.

More on this issue to follow.


 
 
Eugene V Koonin
30 October 2008 @ 12:28 pm
Я долго спал, без облика и склада,
Не разбирая снов на дне души.
Потом я встал, наелся мармелада.
И в мир вхожу - и люди хороши
 
 
Eugene V Koonin
26 October 2008 @ 08:50 pm

Got this email today...is kindergarten next?

"Dr. Koonin,
 
I am an 8th grader at F. C. Martin K-8, and International Baccalaureate school in Miami, Florida.  I have been given an assignment that requires that I obtain data from your work, Ribosomal Translation of RNA.  I have searched for this work and although I have found much of your work, I cannot find this particular piece.  Can you help me?
 
I would appreciate it very much."

 
 
 
 

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